Jaroszewski, Adam C.: search on Z-Library

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1

Improving the quality of twilight-zone alignments

Lukasz Jaroszewski, Adam Godzik, Leszek Rychlewski

Journal:

Protein Science

Year:

2000

Language:

english

File:

PDF, 2.01 MB

english, 2000

2

Expansion of the Protein Repertoire in Newly Explored Environments: Human Gut Microbiome Specific Protein Families

Ellrott, Kyle, Jaroszewski, Lukasz, Li, Weizhong, Wooley, John C., Godzik, Adam, Jones, David T.

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 235 KB

english, 2010

3

PROPER: Performance visualization for optimizing and comparing ranking classifiers in MATLAB

Jahandideh, Samad, Sharifi, Fatemeh, Jaroszewski, Lukasz, Godzik, Adam

Journal:

Source Code for Biology and Medicine

Year:

2015

Language:

english

File:

PDF, 976 KB

english, 2015

4

Molecular modeling of phosphorylation sites in proteins using a database of local structure segments

Dariusz Plewczynski, Lukasz Jaroszewski, Adam Godzik, Andrzej Kloczkowski, Leszek Rychlewski

Journal:

Journal of Molecular Modeling

Year:

2005

Language:

english

File:

PDF, 385 KB

english, 2005

5

Structural genomics is the largest contributor of novel structural leverage

Rajesh Nair, Jinfeng Liu, Ta-Tsen Soong, Thomas B. Acton, John K. Everett, Andrei Kouranov, Andras Fiser, Adam Godzik, Lukasz Jaroszewski, Christine Orengo, Gaetano T. Montelione, Burkhard Rost

Journal:

Journal of Structural and Functional Genomics

Year:

2009

Language:

english

File:

PDF, 489 KB

english, 2009

6

Structural analysis of arabinose-5-phosphate isomerase from Bacteroides fragilis and functional implications

Chiu, Hsiu-Ju, Grant, Joanna C., Farr, Carol L., Jaroszewski, Lukasz, Knuth, Mark W., Miller, Mitchell D., Elsliger, Marc-André, Deacon, Ashley M., Godzik, Adam, Lesley, Scott A., Wilson, Ian A.

Journal:

Acta Crystallographica Section D Biological Crystallography

Year:

2014

Language:

english

File:

PDF, 2.68 MB

english, 2014

7

Comparison of sequence profiles. Strategies for structural predictions using sequence information

Leszek Rychlewski, Weizhong Li, Lukasz Jaroszewski, Adam Godzik

Journal:

Protein Science

Year:

2000

Language:

english

File:

PDF, 311 KB

english, 2000

8

Structures of a Bifunctional Cell Wall Hydrolase CwlT Containing a Novel Bacterial Lysozyme and an NlpC/P60 dl-Endopeptidase

Xu, Qingping, Chiu, Hsiu-Ju, Farr, Carol L., Jaroszewski, Lukasz, Knuth, Mark W., Miller, Mitchell D., Lesley, Scott A., Godzik, Adam, Elsliger, Marc-André, Deacon, Ashley M., Wilson, Ian A.

Journal:

Journal of Molecular Biology

Year:

2014

Language:

english

File:

PDF, 2.76 MB

english, 2014

9

Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization

Marcin Grynberg, Lukasz Jaroszewski, Adam Godzik

Journal:

BMC Bioinformatics

Year:

2003

Language:

english

File:

PDF, 798 KB

english, 2003

10

Improving the chances of successful protein structure determination with a random forest classifier

Jahandideh, Samad, Jaroszewski, Lukasz, Godzik, Adam

Journal:

Acta Crystallographica Section D Biological Crystallography

Year:

2014

Language:

english

File:

PDF, 887 KB

english, 2014

11

Protael: protein data visualization library for the web

Sedova, Mayya, Jaroszewski, Lukasz, Godzik, Adam

Journal:

Year:

2015

Language:

english

File:

PDF, 324 KB

english, 2015

12

Coronavirus3D: 3D structural visualization of COVID-19 genomic divergence

Sedova, Mayya, Jaroszewski, Lukasz, Alisoltani, Arghavan, Godzik, Adam, Elofsson, Arne

Journal:

Year:

2020

File:

PDF, 1.16 MB

2020

13

Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct?

Jeffrey Skolnick, Adam Godzik, Lukasz Jaroszewski, 12Andrzej Kolinski

Journal:

Protein Science

Year:

1997

Language:

english

File:

PDF, 1.15 MB

english, 1997

14

Crystal Structure of the Actin Binding Domain of the Cyclase-Associated Protein †

Dodatko, Tetyana, Fedorov, Alexander A., Grynberg, Marcin, Patskovsky, Yury, Rozwarski, Denise A., Jaroszewski, Lukasz, Aronoff-Spencer, Eliah, Kondraskina, Elena, Irving, Tom, Godzik, Adam, Almo, Ste

Journal:

Year:

2004

Language:

english

File:

PDF, 1.14 MB

english, 2004

15

ATP-activated oligomerization as a mechanism for apoptosis regulation: Fold and mechanism prediction for CED-4

Lukasz Jaroszewski, Leszek Rychlewski, John C. Reed, Adam Godzik

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2000

Language:

english

File:

PDF, 300 KB

english, 2000

16

Internal organization of large protein families: Relationship between the sequence, structure, and function-based clustering

Xiao-Hui Cai, Lukasz Jaroszewski, John Wooley, Adam Godzik

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 395 KB

english, 2011

17

Integrated web service for improving alignment quality based on segments comparison

Dariusz Plewczynski, Leszek Rychlewski, Yuzhen Ye, Lukasz Jaroszewski, Adam Godzik

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 402 KB

english, 2004

18

Two Pfam protein families characterized by a crystal structure of protein lpg2210 fromLegionella pneumophila

Coggill, Penelope, Eberhardt, Ruth Y, Finn, Robert D, Chang, Yuanyuan, Jaroszewski, Lukasz, Godzik, Adam, Das, Debanu, Xu, Qingping, Axelrod, Herbert L, Aravind, L, Murzin, Alexey G, Bateman, Alex

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 1.28 MB

english, 2013

19

Insights into Substrate Specificity of NlpC/P60 Cell Wall Hydrolases Containing Bacterial SH3 Domains

Xu, Qingping, Mengin-Lecreulx, Dominique, Liu, Xueqian W., Patin, Delphine, Farr, Carol L., Grant, Joanna C., Chiu, Hsiu-Ju, Jaroszewski, Lukasz, Knuth, Mark W., Godzik, Adam, Lesley, Scott A., Elslig

Journal:

Year:

2015

Language:

english

File:

PDF, 3.05 MB

english, 2015

20

FATCAT 2.0: towards a better understanding of the structural diversity of proteins

Li, Zhanwen, Jaroszewski, Lukasz, Iyer, Mallika, Sedova, Mayya, Godzik, Adam

Journal:

Nucleic Acids Research

Year:

2020

File:

PDF, 1.82 MB

2020

21

NMR in structural genomics to increase structural coverage of the protein universe

Serrano, Pedro, Dutta, Samit K., Proudfoot, Andrew, Mohanty, Biswaranjan, Susac, Lukas, Martin, Bryan, Geralt, Michael, Jaroszewski, Lukasz, Godzik, Adam, Elsliger, Marc, Wilson, Ian A., Wüthrich, Kur

Journal:

Year:

2016

Language:

english

File:

PDF, 1.41 MB

english, 2016

22

Crystal structure of a zinc-containing glycerol dehydrogenase (TM0423) from Thermotoga maritima at 1.5 Å resolution

Linda S. Brinen, Jaume M. Canaves, Xiaoping Dai, Ashley M. Deacon, Marc A. Elsliger, Said Eshaghi, Ross Floyd, Adam Godzik, Carina Grittini, Slawomir K. Grzechnik, Chittibabu Guda, Lukasz Jaroszewski,

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 133 KB

english, 2003

23

Structure of the pilus assembly protein TadZ from Eubacterium rectale: implications for polar localization

Qingping Xu, Beat Christen, Hsiu-Ju Chiu, Lukasz Jaroszewski, Heath E. Klock, Mark W. Knuth, Mitchell D. Miller, Marc-André Elsliger, Ashley M. Deacon, Adam Godzik, Scott A. Lesley, David H. Figurski,

Journal:

Molecular Microbiology

Year:

2012

Language:

english

File:

PDF, 2.35 MB

english, 2012

24

Molecular characterization of novel pyridoxal-5′-phosphate-dependent enzymes from the human microbiome

Fleischman, Nicholas M., Das, Debanu, Kumar, Abhinav, Xu, Qingping, Chiu, Hsiu-Ju, Jaroszewski, Lukasz, Knuth, Mark W., Klock, Heath E., Miller, Mitchell D., Elsliger, Marc-André, Godzik, Adam, Lesley

Journal:

Protein Science

Year:

2014

Language:

english

File:

PDF, 5.10 MB

english, 2014

25

Crystal structure of a member of a novel family of dioxygenases (PF10014) reveals a conserved cupin fold and active site

Xu, Qingping, Grant, Joanna, Chiu, Hsiu-Ju, Farr, Carol L., Jaroszewski, Lukasz, Knuth, Mark W., Miller, Mitchell D., Lesley, Scott A., Godzik, Adam, Elsliger, Marc-André, Deacon, Ashley M., Wilson, I

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 512 KB

english, 2014

26

Crystal structure of a putative quorum sensing-regulated protein (PA3611) from the Pseudomonas-specific DUF4146 family

Das, Debanu, Chiu, Hsiu-Ju, Farr, Carol L., Grant, Joanna C., Jaroszewski, Lukasz, Knuth, Mark W., Miller, Mitchell D., Tien, Henry J., Elsliger, Marc-André, Deacon, Ashley M., Godzik, Adam, Lesley, S

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 494 KB

english, 2014

27

Exploration of Uncharted Regions of the Protein Universe

Jaroszewski, Lukasz, Li, Zhanwen, Krishna, S. Sri, Bakolitsa, Constantina, Wooley, John, Deacon, Ashley M., Wilson, Ian A., Godzik, Adam, Chothia, Cyrus

Journal:

Year:

2009

Language:

english

File:

PDF, 863 KB

english, 2009

28

In search for more accurate alignments in the twilight zone

Lukasz Jaroszewski, Weizhong Li, Adam Godzik

Journal:

Protein Science

Year:

2002

Language:

english

File:

PDF, 403 KB

english, 2002

29

The challenge of protein structure determination—lessons from structural genomics

Lukasz Slabinski, Lukasz Jaroszewski, Ana P.C. Rodrigues, Leszek Rychlewski, Ian A. Wilson, Scott A. Lesley, Adam Godzik

Journal:

Protein Science

Year:

2007

Language:

english

File:

PDF, 714 KB

english, 2007

30

Tyrosine phosphorylation of VHR phosphatase by ZAP-70

Alonso, Andres, Rahmouni, Souad, Williams, Scott, van Stipdonk, Marianne, Jaroszewski, Lukasz, Godzik, Adam, Abraham, Robert T., Schoenberger, Stephen P., Mustelin, Tomas

Journal:

Nature Immunology

Year:

2002

Language:

english

File:

PDF, 616 KB

english, 2002

31

Difference contact maps: From what to why in the analysis of the conformational flexibility of proteins

Iyer, Mallika, Li, Zhanwen, Jaroszewski, Lukasz, Sedova, Mayya, Godzik, Adam, Salsbury, Freddie

Journal:

Year:

2020

Language:

english

File:

PDF, 2.29 MB

english, 2020

32

Behavioral and electrophysiological correlates of training-induced cognitive control improvements

Alexander J. Millner, Adam C. Jaroszewski, Harish Chamarthi, Diego A. Pizzagalli

Journal:

Year:

2012

Language:

english

File:

PDF, 769 KB

english, 2012

33

The interplay of fold recognition and experimental structure determination in structural genomics

Iddo Friedberg, Lukasz Jaroszewski, Yuzhen Ye, Adam Godzik

Journal:

Current Opinion in Structural Biology

Year:

2004

Language:

english

File:

PDF, 205 KB

english, 2004

34

Structure-Guided Functional Characterization of DUF1460 Reveals a Highly Specific NlpC/P60 Amidase Family

Xu, Qingping, Mengin-Lecreulx, Dominique, Patin, Delphine, Grant, Joanna C., Chiu, Hsiu-Ju, Jaroszewski, Lukasz, Knuth, Mark W., Godzik, Adam, Lesley, Scott A., Elsliger, Marc-André, Deacon, Ashley M.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.60 MB

english, 2014

35

PSI-2: Structural Genomics to Cover Protein Domain Family Space

Benoît H. Dessailly, Rajesh Nair, Lukasz Jaroszewski, J. Eduardo Fajardo, Andrei Kouranov, David Lee, Andras Fiser, Adam Godzik, Burkhard Rost, Christine Orengo

Journal:

Year:

2009

Language:

english

File:

PDF, 546 KB

english, 2009

36

Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies

Baohong Zhang, Lukasz Jaroszewski, Leszek Rychlewski, Adam Godzik

Journal:

Folding and Design

Year:

1997

Language:

english

File:

PDF, 222 KB

english, 1997

37

The effects of buspirone and diazepam on aversive context- and social isolation-induced ultrasonic vocalisation

Adam Hamed, Tomasz Jaroszewski, Piotr Maciejak, Janusz Szyndler, Małgorzata Lehner, Ita Kamecka, Mieszko Olczak, Urszula Kuzinska, Ewa Taracha, Adam Płaźnik

Journal:

Physiology & Behavior

Year:

2009

Language:

english

File:

PDF, 672 KB

english, 2009

38

Multiple Model Approach: Exploring the Limits of Comparative Modeling

Lukasz Jaroszewski, Krzysztof Pawlowski, Adam Godzik

Journal:

Journal of Molecular Modeling

Year:

1998

Language:

english

File:

PDF, 664 KB

english, 1998

39

Challenges of structural genomics: bioinformatics

Adam Godzik, Jaume Canaves, Slawomir Grzechnik, Lukasz Jaroszewski, Andrew Morse, Jie Ouyang, Xianhong Wang, Bill West, John Wooley

Journal:

Year:

2003

Language:

english

File:

PDF, 176 KB

english, 2003

40

What is the influence of long-term isolation on appetitive ultrasound vocalization in rats? A new model of social interaction

Hamed, Adam, Jaroszewski, Tomasz, Maciejak, Piotr, Szyndler, Janusz, Lehner, Małgorzata, Taracha, Ewa, Płaźnik, Adam

Journal:

Pharmacological Reports

Year:

2009

Language:

english

File:

PDF, 60 KB

english, 2009

41

Numerous proteins with unique characteristics are degraded by the 26S proteasome following monoubiquitination

Braten, Ori, Livneh, Ido, Ziv, Tamar, Admon, Arie, Kehat, Izhak, Caspi, Lilac H., Gonen, Hedva, Bercovich, Beatrice, Godzik, Adam, Jahandideh, Samad, Jaroszewski, Lukasz, Sommer, Thomas, Kwon, Yong Ta

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.15 MB

english, 2016

42

Genome Pool Strategy for Structural Coverage of Protein Families

Lukasz Jaroszewski, Lukasz Slabinski, John Wooley, Ashley M. Deacon, Scott A. Lesley, Ian A. Wilson, Adam Godzik

Journal:

Year:

2008

Language:

english

File:

PDF, 586 KB

english, 2008

43

Cancer3D 2.0: interactive analysis of 3D patterns of cancer mutations in cancer subsets

Sedova, Mayya, Iyer, Mallika, Li, Zhanwen, Jaroszewski, Lukasz, Post, Kai W, Hrabe, Thomas, Porta-Pardo, Eduard, Godzik, Adam

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 540 KB

english, 2018

44

Structure of galactarate dehydratase, a new fold in an enolase involved in bacterial fitness after antibiotic treatment

Rosas‐Lemus, Monica, Minasov, George, Shuvalova, Ludmilla, Wawrzak, Zdzislaw, Kiryukhina, Olga, Mih, Nathan, Jaroszewski, Lukasz, Palsson, Bernhard, Godzik, Adam, Satchell, Karla J. F.

Journal:

Protein Science

Year:

2019

File:

PDF, 4.13 MB

2019

45

PDBFlex: exploring flexibility in protein structures

Hrabe, Thomas, Li, Zhanwen, Sedova, Mayya, Rotkiewicz, Piotr, Jaroszewski, Lukasz, Godzik, Adam

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 1.36 MB

english, 2016

46

A brief mobile app reduces nonsuicidal and suicidal self-injury: Evidence from three randomized controlled trials.

Franklin, Joseph C., Fox, Kathryn R., Franklin, Christopher R., Kleiman, Evan M., Ribeiro, Jessica D., Jaroszewski, Adam C., Hooley, Jill M., Nock, Matthew K.

Journal:

Journal of Consulting and Clinical Psychology

Year:

2016

Language:

english

File:

PDF, 776 KB

english, 2016

47

Crystal structure of a putative glutamine amido transferase (TM1158) from Thermotoga maritima at 1.7 Å resolution

Robert Schwarzenbacher, Ashley M. Deacon, Lukasz Jaroszewski, Linda S. Brinen, Jaume M. Canaves, Xiaoping Dai, Marc-André Elsliger, Ross Floyd, Adam Godzik, Carina Grittini, Slawomir K. Grzechnik, Hea

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 310 KB

english, 2004

48

Structures of single‐layer β‐sheet proteins evolved from β‐hairpin repeats

Xu, Qingping, Biancalana, Matthew, Grant, Joanna C., Chiu, Hsiu‐Ju, Jaroszewski, Lukasz, Knuth, Mark W., Lesley, Scott A., Godzik, Adam, Elsliger, Marc‐André, Deacon, Ashley M., Wilson, Ian A.

Journal:

Protein Science

Year:

2019

Language:

english

File:

PDF, 2.76 MB

english, 2019

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